GL1X · GenesisL1 explorer

Ligand · 1YF

1YF · [(2R,3R,4S,5S,6R)-4-formamido-6-methyl-3,5-bis(oxidanyl)oxan-2-yl] [[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate

1YF, [(2R,3R,4S,5S,6R)-4-formamido-6-methyl-3,5-bis(oxidanyl)oxan-2-yl] [[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate (C17 H27 N3 O15 P2, 575.4 g/mol)…

Component
1YF
Formula
C17 H27 N3 O15 P2
Class
ligand
Structures
2
PDB entries
1

Binding sites

1YF in 2 structures; the first of them:

  • 4LY3 · Crystal structure of WlaRD, a sugar 3N-formyl transferase in the presence of dTPD-Qui3N… · 1YF B302 · binds LYS9, ASN35, GLU77, PHE78, ASP79, ASN94, ILE95, HIS96 and 12 more
  • 4LY3 · Crystal structure of wlard, a sugar 3N-formyl transferase in the presence of dtpd-QUI3N… · 1YF B302 · binds LYS9, ASN35, GLU77, PHE78, ASP79, ASN94, ILE95, HIS96 and 12 more

Residues it binds most

PHE 2, ASN 2, ASP 2, ILE 2, TYR 2, GLN 2, GLU 2, GLY 2, HIS 2, LEU 2 (residue and the binding sites it lines).

Found with

  • 1YJ · N-[4-({[(6R)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid
  • T3Q · [(3R,4S,5S,6R)-4-amino-3,5-dihydroxy-6-methyloxan-2-yl][hydroxy-[[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate
  • MPO · 3[N-morpholino]propane sulfonic acid

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