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Ligand · 1II

1II · 3-[1-[4,4-bis(4-fluorophenyl)butyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one

1II, 3-[1-[4,4-bis(4-fluorophenyl)butyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one (C28 H29 F2 N3 O, 461.6 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3 PDB entries). Every binding site with its residues within 4.5 Å…

Component
1II
Formula
C28 H29 F2 N3 O
Class
ligand
Structures
4
PDB entries
3

Binding sites

1II in 4 structures; the first of them:

  • 7WLL · CryoEM structure of human low-voltage activated T-type calcium channel Cav3.3 in complex… · 1II A2301 · binds PHE387, ASN391, LEU394, PHE815, LEU818, THR819, GLN820, ASN850 and 11 more
  • 8GU1 · Crystal Structure of putative amino acid binding periplasmic ABC transporter protein from… · 1II A301 · binds GLY13, THR14, ASP15, TYR18, SER22, VAL58, LEU61, ILE62 and 14 more
  • 8ZYQ · Cryo-EM Structure of pimozide-bound hERG Channel · 1II B1101 · binds SER621, LEU622, THR623, SER624, MET645, GLY648, SER649, TYR652 and 18 more
  • 7WLL · Cryoem structure of human low-voltage activated T-type calcium channel CAV3.3 in complex… · 1II A2301 · binds PHE387, ASN391, LEU394, LEU818, THR819, GLN820, ASN850, PHE854 and 9 more

Residues it binds most

LEU 5, SER 5, VAL 4, PHE 5, THR 5, ASN 4, GLY 3, TYR 3, ILE 4, ASP 2 (residue and the binding sites it lines).

Found with

  • 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine
  • Y01 · Cholesterol hemisuccinate
  • CA · Calcium ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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