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Ligand · 1DS

1DS · 1-O-decanoyl-beta-D-tagatofuranosyl beta-D-allopyranoside

1DS, 1-O-decanoyl-beta-D-tagatofuranosyl beta-D-allopyranoside (C22 H40 O12, 496.6 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
1DS
Formula
C22 H40 O12
Class
ligand
Structures
2
PDB entries
2

Binding sites

1DS in 2 structures; the first of them:

  • 4HYT · Na,K-ATPase in the E2P state with bound ouabain and Mg2+ in the cation-binding site · 1DS A1107 · binds LYS977, PRO978, THR979, PHE982, TYR68, TYR21, VAL937, PHE938 and 4 more
  • 7QTV · Beryllium fluoride form of the Na+,K+-ATPase (E2-BeFx) · 1DS A1104 · binds GLU868, LYS977, PRO978, THR979, PHE982, TYR68, TYR21, PHE938 and 3 more

Residues it binds most

LYS 2, PHE 2, TYR 2, GLY 2, MET 2, PRO 2, THR 2, GLN 1, GLU 1, VAL 1 (residue and the binding sites it lines).

Found with

  • 1AT · beta-D-fructofuranosyl 6-O-decanoyl-alpha-D-glucopyranoside
  • CLR · Cholesterol
  • MG · Magnesium ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • 17F · O-[(S)-({(2R)-2,3-bis[(9Z)-octadec-9-enoyloxy]propyl}oxy)(hydroxy)phosphoryl]-L-serine
  • BEF · Beryllium trifluoride ion
  • CE1 · O-dodecanyl octaethylene glycol
  • OBN · Ouabain

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