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Ligand · 13U

13U · N-cyclooctylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide

13U, N-cyclooctylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide (C23 H35 N5 O2, 413.6 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it…

Component
13U
Formula
C23 H35 N5 O2
Class
ligand
Structures
4
PDB entries
2

Binding sites

13U in 4 structures; the first of them:

  • 2ZHE · Exploring thrombin S3 pocket · 13U H501 · binds HIS57, TYR60A, TRP60D, GLU97A, ASN98, LEU99, ILE174, ASP189 and 12 more
  • 2ZQ2 · Exploring trypsin S3 pocket · 13U A501 · binds HIS57, ASN97, THR98, LEU99, GLN175, ASP189, SER190, CYS191 and 11 more
  • 2ZHE · Exploring thrombin S3 pocket · 13U H501 · binds HIS57, TYR60A, TRP60D, GLU97A, ASN98, LEU99, ILE174, ASP189 and 12 more
  • 2ZQ2 · Exploring trypsin S3 pocket · 13U A501 · binds HIS57, ASN97, THR98, LEU99, GLN175, ASP189, SER190, CYS191 and 11 more

Residues it binds most

GLY 4, SER 4, CYS 4, TRP 4, VAL 4, ASN 4, ASP 4, GLN 2, GLU 2, HIS 4 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • NA · Sodium ion
  • GOL · Glycerol

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