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Ligand · 0WD

0WD · [[(2R,3S,4R,5R)-5-(3-aminocarbonyl-4H-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate

0WD, [[(2R,3S,4R,5R)-5-(3-aminocarbonyl-4H-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate (C21 H30 N7 O17 P3…

Component
0WD
Formula
C21 H30 N7 O17 P3
Class
ligand
Structures
4
PDB entries
2

Binding sites

0WD in 4 structures; the first of them:

  • 5ULI · Crystal Structure of mouse DXO in complex with (3'-NADP)+ and calcium ion · 0WD A402 · binds LEU54, ARG58, ARG95, GLU97, GLU101, TRP131, ARG132, GLY133 and 11 more
  • 5ULJ · Crystal structure of Scheffersomyces stipitis Rai1 in complex with (3'-NADP)+ and calcium… · 0WD A402 · binds ASN76, MET77, TYR107, ARG108, GLY109, TYR176, GLN209, ALA226 and 4 more
  • 5ULI · Crystal structure of mouse dxo in complex with (3'-NADP)+ and calcium ion · 0WD A402 · binds ARG58, ARG95, GLU97, TRP131, ARG132, GLY133, HIS134, GLU164 and 7 more
  • 5ULJ · Crystal structure of scheffersomyces stipitis RAI1 in complex with (3'-NADP)+ and calcium… · 0WD A402 · binds ASN76, MET77, TYR107, ARG108, GLY109, TYR176, GLN209, ALA226 and 4 more

Residues it binds most

GLU 6, GLY 6, ARG 6, GLN 6, TYR 6, ASN 4, LYS 6, ALA 4, MET 4, SER 4 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • PPV · Pyrophosphate

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