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Ligand · 0OJ

0OJ · South-methanocarba-2'-deoxyadenosine triphosphate

0OJ, South-methanocarba-2'-deoxyadenosine triphosphate (C12 H18 N5 O11 P3, 501.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
0OJ
Formula
C12 H18 N5 O11 P3
Class
ligand
Structures
4
PDB entries
2

Binding sites

0OJ in 4 structures; the first of them:

  • 4EBD · Conformationally Restrained North-methanocarba-2'-deoxyadenosine Corrects the Error-Prone… · 0OJ A501 · binds ASP34, LEU35, ASP36, CYS37, PHE38, TYR39, VAL64, THR65 and 9 more
  • 4GC7 · Crystal structure of Dpo4 in complex with S-MC-dADP opposite dT · 0OJ A401 · binds ASP7, TYR10, PHE11, TYR12, ALA44, THR45, ARG51, ALA57 and 7 more
  • 4EBD · Conformationally restrained north-methanocarba-2'-deoxyadenosine corrects the error-prone… · 0OJ A501 · binds ASP34, LEU35, ASP36, CYS37, PHE38, TYR39, VAL64, THR65 and 9 more
  • 4GC7 · Crystal structure of DPO4 in complex with S-mc-dadp opposite dt · 0OJ A401 · binds ASP7, TYR10, PHE11, TYR12, ALA44, THR45, ARG51, ALA57 and 7 more

Residues it binds most

ASP 6, TYR 6, ALA 4, LYS 6, PHE 6, ARG 6, DG 6, DT 6, THR 6, DC 4 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • GOL · Glycerol

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