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Ligand · 0OH

0OH · North-methanocarba-2'-deoxyadenosine triphosphate

0OH, North-methanocarba-2'-deoxyadenosine triphosphate (C12 H18 N5 O11 P3, 501.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
0OH
Formula
C12 H18 N5 O11 P3
Class
ligand
Structures
4
PDB entries
2

Binding sites

0OH in 4 structures; the first of them:

  • 4EBC · Conformationally Restrained North-methanocarba-2'-deoxyadenosine Corrects the Error-Prone… · 0OH A501 · binds ASP34, LEU35, ASP36, CYS37, PHE38, TYR39, GLN59, VAL64 and 12 more
  • 4GC6 · Crystal structure of Dpo4 in complex with N-MC-dAMP opposite dT · 0OH A401 · binds PHE8, ASP9, TYR10, PHE11, TYR12, ALA44, THR45, ARG51 and 7 more
  • 4EBC · Conformationally restrained north-methanocarba-2'-deoxyadenosine corrects the error-prone… · 0OH A501 · binds ASP34, LEU35, ASP36, CYS37, PHE38, TYR39, GLN59, VAL64 and 12 more
  • 4GC6 · Crystal structure of DPO4 in complex with N-mc-damp opposite dt · 0OH A401 · binds PHE8, ASP9, TYR10, PHE11, TYR12, ALA44, THR45, ARG51 and 7 more

Residues it binds most

ASP 4, PHE 4, TYR 4, ALA 2, ARG 4, DG 4, DT 4, LEU 2, LYS 2, THR 4 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • GOL · Glycerol

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