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Ligand · 0G8

0G8 · [(2R,5S)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-1,3-oxathiolan-2-yl]methyl trihydrogen diphosphate

0G8, [(2R,5S)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-1,3-oxathiolan-2-yl]methyl trihydrogen diphosphate (C8 H13 N3 O9 P2 S, 389.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its…

Component
0G8
Formula
C8 H13 N3 O9 P2 S
Class
ligand
Structures
2
PDB entries
1

Binding sites

0G8 in 2 structures; the first of them:

  • 4QWA · TERNARY CRYSTAL STRUCTURES OF A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS… · 0G8 A401 · binds ASP7, PHE8, ASP9, TYR10, PHE11, TYR12, ALA44, THR45 and 10 more
  • 4QWA · Ternary crystal structures of a Y-family DNA polymerase DPO4 from sulfolobus solfataricus… · 0G8 A401 · binds ASP7, PHE8, ASP9, TYR10, PHE11, TYR12, ALA44, THR45 and 10 more

Residues it binds most

ALA 2, ASP 2, DG 2, PHE 2, TYR 2, ARG 2, DC 2, GLY 2, ILE 2, LYS 2 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion

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