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Ligand · 0D8

0D8 · 3-aminopropan-1-ol

0D8, 3-aminopropan-1-ol (C3 H9 N O, 75.1 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
0D8
Formula
C3 H9 N O
Class
ligand
Structures
4
PDB entries
2

Binding sites

0D8 in 4 structures; the first of them:

  • 2N7B · Solution structure of the human Siglec-8 lectin domain in complex with 6'sulfo sialyl… · 0D8 A201 · binds GLN122, LEU123
  • 4V37 · Crystal structure of betaine aldehyde dehydrogenase from spinach showing a thiohemiacetal… · 0D8 A1499 · binds TRP167, ILE290, SER292, TRP443, PRO449, CYS450, PHE451, TRP456 and 1 more
  • 2N7B · Solution structure of the human siglec-8 lectin domain in complex with 6'SULFO sialyl… · 0D8 A201 · binds GLN122, LEU123
  • 4V37 · Crystal structure of betaine aldehyde dehydrogenase from spinach showing a thiohemiacetal… · 0D8 A1499 · binds TRP167, ILE290, SER292, TRP443, PRO449, CYS450, PHE451, TRP456 and 1 more

Residues it binds most

TRP 10, GLN 12, PHE 10, CYS 10, PRO 10, SER 8, LEU 4, ILE 2 (residue and the binding sites it lines).

Found with

  • AE3 · 2-(2-ethoxyethoxy)ethanol
  • NAD · Nicotinamide-adenine-dinucleotide
  • K · Potassium ion
  • FUC · alpha-L-fucopyranose
  • G6S · 6-O-sulfo-beta-D-galactopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • SIA · N-acetyl-alpha-neuraminic acid
  • FMT · Formic acid
  • PG4 · Tetraethylene glycol

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