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Ligand · 08M

08M · N~5~-(pyrazin-2-ylcarbonyl)-L-ornithine

08M, N~5~-(pyrazin-2-ylcarbonyl)-L-ornithine (C10 H14 N4 O3, 238.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
08M
Formula
C10 H14 N4 O3
Class
ligand
Structures
2
PDB entries
2

Binding sites

08M in 2 structures; the first of them:

  • 3U4W · Src in complex with DNA-templated macrocyclic inhibitor MC4B · 08M B4 · binds LEU273, GLN275, GLY276, VAL281, ALA293, LYS295, THR338, GLU339 and 8 more
  • 3U51 · Src in complex with DNA-templated macrocyclic inhibitor MC1 · 08M C4 · binds LEU273, GLY274, GLN275, GLY276, VAL281, ALA293, LYS295, GLU339 and 5 more

Residues it binds most

GLY 3, LEU 3, ALA 3, GLN 3, GLU 3, LYS 3, MET 3, TYR 3, VAL 3, THR 2 (residue and the binding sites it lines).

Found with

  • DAB · 2,4-diaminobutyric acid
  • FUM · Fumaric acid
  • ALC · 2-amino-3-cyclohexyl-propionic acid
  • P4E · (2S,4E)-2-amino-5-phenylpent-4-enoic acid
  • NH2 · Amino group
  • SO4 · Sulfate ion
  • GOL · Glycerol

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