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Ligand · 05Y

05Y · ~{N}-[1-(2-pyridin-2-ylethyl)benzimidazol-2-yl]propanamide

05Y, ~{N}-[1-(2-pyridin-2-ylethyl)benzimidazol-2-yl]propanamide (C17 H18 N4 O, 294.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
05Y
Formula
C17 H18 N4 O
Class
ligand
Structures
2
PDB entries
1

Binding sites

05Y in 2 structures; the first of them:

  • 7OPR · Rab27a fusion with Slp2a-RBDa1 effector covalent adduct with CB1 in C123 · 05Y A210 · binds LYS11, ARG90, ASP91, ALA92, MET93, TYR122, CYS123, ILE181 and 2 more
  • 7OPR · RAB27A fusion with SLP2A-RBDA1 effector covalent adduct with CB1 in C123 · 05Y A210 · binds LYS11, ARG90, ASP91, ALA92, MET93, TYR122, CYS123, ILE181 and 2 more

Residues it binds most

ARG 4, MET 4, ALA 4, ASP 4, CYS 4, ILE 4, LYS 4, TYR 4 (residue and the binding sites it lines).

Found with

  • GNP · Phosphoaminophosphonic acid-guanylate ester
  • MG · Magnesium ion
  • GOL · Glycerol

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