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Ligand · 05W

05W · (2R,3S,4S)-4-azanyl-2,6-dimethyl-heptane-1,3-diol

05W, (2R,3S,4S)-4-azanyl-2,6-dimethyl-heptane-1,3-diol (C9 H21 N O2, 175.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
05W
Formula
C9 H21 N O2
Class
ligand
Structures
4
PDB entries
4

Binding sites

05W in 4 structures; the first of them:

  • 4Y84 · Yeast 20S proteasome in complex with N3-A(4,4-F2P)NLL-ep · 05W e6 · binds THR1, ARG19, SER20, THR21, CYS31, LYS33, GLY45, ALA46 and 6 more
  • 4Y8G · Yeast 20S proteasome in complex with N3-apnll-ep · 05W c6 · binds THR1, ARG19, SER20, THR21, CYS31, LYS33, GLY45, ALA46 and 6 more
  • 4Y8H · Yeast 20S proteasome in complex with N3-apal-ep · 05W c6 · binds THR1, ARG19, SER20, THR21, CYS31, LYS33, GLY45, ALA46 and 6 more
  • 4Y8L · Yeast 20S proteasome in complex with ac-apll-ep · 05W c5 · binds THR1, ARG19, ALA20, THR21, VAL31, LYS33, MET45, ALA46 and 5 more

Residues it binds most

THR 22, ALA 22, SER 22, GLY 22, ARG 22, LYS 22, NLE 12, MET 8, TYR 8, VAL 7 (residue and the binding sites it lines).

Found with

  • ACE · Acetyl group
  • MG · Magnesium ion
  • CL · Chloride ion
  • MES · 2-(N-morpholino)-ethanesulfonic acid
  • AZI · Azide ion

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