MolNFT v2 · #63954 · protein
Crystal structure of Intern Domain of proteasome-associated ATPase, Mycobacterium tuberculosis
3FP9: “Crystal structure of Intern Domain of proteasome-associated ATPase, Mycobacterium tuberculosis”. X-ray diffraction at 2, 20 pockets (best druggability 0.72). MolNFT v2 #63954 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 3FP9
- Type
- protein
- Length
- 1,684 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2
- Source
- Mycobacterium tuberculosis
- Molecule
- Proteasome-associated ATPase
- UniProt
- P63345
- Pockets
- 20 · best druggability 0.72
Structure
x-ray diffraction · resolution 2 · 7 distinct chains · 11% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Proteasome-associated ATPase | protein | 150 | 11% helix, 41% strand | P63345 |
| B, C, H, I | Proteasome-associated ATPase | protein | 141 | 11% helix, 43% strand | P63345 |
| D, J | Proteasome-associated ATPase | protein | 142 | 11% helix, 42% strand | P63345 |
| E | Proteasome-associated ATPase | protein | 130 | 12% helix, 48% strand | P63345 |
| F, K | Proteasome-associated ATPase | protein | 140 | 11% helix, 44% strand | P63345 |
| G | Proteasome-associated ATPase | protein | 142 | 11% helix, 43% strand | P63345 |
| L | Proteasome-associated ATPase | protein | 134 | 12% helix, 46% strand | P63345 |
Pockets
20 pockets found on a 1 Å grid, 13 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 538 | 0.72 | 0.81 | 43 | empty |
| 2 | 645 | 0.72 | 0.79 | 56 | empty |
| 3 | 675 | 0.72 | 0.78 | 57 | empty |
| 4 | 587 | 0.72 | 0.80 | 55 | empty |
| 5 | 543 | 0.71 | 0.80 | 47 | empty |
Interfaces
19 interfaces between chains.
- I–J · 1150 Ų buried · 18 hydrogen bonds · protein-protein
- A–F · 1148 Ų buried · 17 hydrogen bonds · protein-protein
- H–I · 1143 Ų buried · 19 hydrogen bonds · protein-protein
- C–D · 1141 Ų buried · 15 hydrogen bonds · protein-protein
- B–C · 1134 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 3FP9 · Crystal structure of intern domain of proteasome-associated ATPase, mycobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P63345
- Elsewhere: RCSB PDB 3FP9 · PDBe 3FP9 · UniProt P63345
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