MolNFT v2 · #51040 · protein

Structure of a periplasmic oligogalacturonide binding protein from Yersinia enterocolitica in complex with trigalacturonic acid

2UVJ · ABC type periplasmic sugar-binding protein: “Structure of a periplasmic oligogalacturonide binding protein from Yersinia enterocolitica in complex with…”. X-ray diffraction at 1.8, 1 ligand (ADA), 3 pockets (best druggability 0.72).…

PDB: 2UVJ
Type: protein
Length: 404 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.8
Source: YERSINIA ENTEROCOLITICA
Molecule: ABC type periplasmic sugar-binding protein
Ligands: ADA
Pockets: 3 · best druggability 0.72

Structure

x-ray diffraction · resolution 1.8 · 1 distinct chain · 49% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ABC type periplasmic sugar-binding protein	protein	404	49% helix, 15% strand	—

Ligands and binding sites

ADA · alpha-D-galactopyranuronic acid · sugar · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	440	0.72	0.82	49	ADA
2	90	0.41	0.78	19	empty
3	108	0.40	0.76	15	empty

Compared structures

2UVJ · Structure of a periplasmic oligogalacturonide binding protein from yersinia… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2UVJ · PDBe 2UVJ

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