MolNFT v2 · #50285 · protein + DNA
Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms
2RDJ: “Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms”. X-ray diffraction at 2.2. MolNFT v2 #50285 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2RDJ
- Type
- protein + DNA
- Length
- 741 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.2
- Source
- Sulfolobus solfataricus; SYNTHETIC CONSTRUCT
- UniProt
- Q97W02
Structure
x-ray diffraction · resolution 2.2 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, E | — | dna | 14 | — | — |
| D | — | dna | 16 | — | — |
| F | — | dna | 15 | — | — |
| A, B | — | protein | 341 | — | Q97W02 |
Compared structures
- 2RDJ · Snapshots of a Y-family DNA polymerase in replication: DPO4 in apo and BINARY/TERNARY… · the same entry in another collection · chain F against F, TM-score 1.00
- Q97W02 · AlphaFold monomer V2.0 prediction for DNA polymerase IV (Q97W02) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97W02
- Elsewhere: RCSB PDB 2RDJ · PDBe 2RDJ · UniProt Q97W02
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