MolNFT v2 · #46369 · protein
Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-Cl Complex
2O24 · Green fluorescent protein: “Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp…”. X-ray diffraction at 1.45, 1 ligand (CL), 2 pockets (best druggability 0.73). MolNFT v2…
- PDB
- 2O24
- Type
- protein
- Length
- 236 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.45
- Source
- Aequorea victoria
- Molecule
- Green fluorescent protein
- UniProt
- P42212
- Ligands
- CL
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · resolution 1.45 · 1 distinct chain · 11% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Green fluorescent protein | protein | 236 | 11% helix, 50% strand | P42212 |
Ligands and binding sites
- CL · Chloride ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 62 | 0.73 | 0.98 | 21 | CL |
| 2 | 77 | 0.34 | 0.75 | 16 | empty |
Compared structures
- 2O24 · Spectroscopic and structural study of the heterotropic linkage between halide and proton… · the same entry in another collection · chain A against A, TM-score 1.00
- P42212 · AlphaFold monomer V2.0 prediction for green fluorescent protein (P42212) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42212
- Elsewhere: RCSB PDB 2O24 · PDBe 2O24 · UniProt P42212
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