MolNFT v2 · #41017 · protein
Yellow fluorescent protein - glutaredoxin fusion protein
2JAD · Yellow fluorescent protein glutaredoxin fusion protein: “Yellow fluorescent protein - glutaredoxin fusion protein”. X-ray diffraction at 2.7, 1 ligand (SO4), 1 pocket (best druggability 0.70). MolNFT v2 #41017 on GenesisL1: 3D…
- PDB
- 2JAD
- Type
- protein
- Length
- 346 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.7
- Source
- AEQUOREA VICTORIA; SACCHAROMYCES CEREVISIAE
- Molecule
- Yellow fluorescent protein glutaredoxin fusion protein
- UniProt
- P42212, P25373
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · resolution 2.7 · 1 distinct chain · 24% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Yellow fluorescent protein glutaredoxin fusion protein | protein | 346 | 24% helix, 39% strand | P42212, P25373 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.70 | 0.97 | 24 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 2JAD · Yellow fluorescent protein - glutaredoxin fusion protein · the same entry in another collection · chain A against A, TM-score 1.00
- P42212 · AlphaFold monomer V2.0 prediction for green fluorescent protein (P42212) · a predicted model of the same protein · chain A against A, TM-score 0.66
- P25373 · AlphaFold monomer V2.0 prediction for glutaredoxin-1 (P25373) · a predicted model of the same protein · chain A against A, TM-score 0.31
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42212
- Every structure of UniProt P25373
- Elsewhere: RCSB PDB 2JAD · PDBe 2JAD · UniProt P42212 · UniProt P25373
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