MolNFT v2 · #3343 · protein

Recombinant sperm whale myoglobin L104N mutant (met)

1CP0 · Protein (myoglobin): “Recombinant sperm whale myoglobin L104N mutant (met)”. X-ray diffraction at 2, 2 ligands (HEM, SO4), 1 pocket (best druggability 0.72). MolNFT v2 #3343 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 1CP0
Type: protein
Length: 154 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2
Source: Physeter catodon
Molecule: Protein (myoglobin)
UniProt: P02185
Ligands: HEM, SO4
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · resolution 2 · 1 distinct chain · 79% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein (myoglobin)	protein	154	79% helix, 0% strand	P02185

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	238	0.72	0.86	32	HEM

Compared structures

1CP0 · Recombinant sperm whale myoglobin L104N mutant (met) · the same entry in another collection · chain A against A, TM-score 1.00
P02185 · AlphaFold monomer V2.0 prediction for myoglobin (P02185) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02185
Elsewhere: RCSB PDB 1CP0 · PDBe 1CP0 · UniProt P02185

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