MolNFT v2 · #30755 · protein
Three-dimensional structure of Bacillus subtilis Q45498 putative protein at resolution 2.5A. Northeast Structural Genomics Consortium target SR204.
2A8E · hypothetical protein yktB: “Three-dimensional structure of Bacillus subtilis Q45498 putative protein at resolution 2.5A. Northeast…”. X-ray diffraction at 2.5, 1 ligand (SO4), 1 pocket (best druggability 0.39). MolNFT v2 #30755 on…
- PDB
- 2A8E
- Type
- protein
- Length
- 210 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.5
- Source
- Bacillus subtilis
- Molecule
- hypothetical protein yktB
- UniProt
- Q45498
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.39
Structure
x-ray diffraction · resolution 2.5 · 1 distinct chain · 48% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | hypothetical protein yktB | protein | 210 | 48% helix, 18% strand | Q45498 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 130 | 0.39 | 0.74 | 19 | empty |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 2A8E · Three-dimensional structure of bacillus subtilis Q45498 putative protein at resolution… · the same entry in another collection · chain A against A, TM-score 1.00
- Q45498 · AlphaFold monomer V2.0 prediction for UPF0637 protein yktb (Q45498) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q45498
- Elsewhere: RCSB PDB 2A8E · PDBe 2A8E · UniProt Q45498
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