MolNFT v2 · #28531 · protein

Dynein Light Chain TcTex-1

1YGT · Cytoplasmic dynein light chain: “Dynein Light Chain TcTex-1”. X-ray diffraction at 1.7, 1 ligand (SO4), 1 pocket (best druggability 0.38). MolNFT v2 #28531 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1YGT
Type: protein
Length: 104 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.7
Source: Drosophila melanogaster
Molecule: Cytoplasmic dynein light chain
UniProt: Q94524
Ligands: SO4
Pockets: 1 · best druggability 0.38

Structure

x-ray diffraction · resolution 1.7 · 1 distinct chain · 33% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytoplasmic dynein light chain	protein	104	33% helix, 29% strand	Q94524

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	97	0.38	0.75	18	SO4

Compared structures

1YGT · Dynein light chain tctex-1 · the same entry in another collection · chain A against A, TM-score 1.00
Q94524 · AlphaFold monomer V2.0 prediction for dynein light chain tctex-type (Q94524) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q94524
Elsewhere: RCSB PDB 1YGT · PDBe 1YGT · UniProt Q94524

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