MolNFT v2 · #25731 · protein
NimA from D. radiodurans with covalenly bound lactate
1W3Q · Nima-related protein: “NimA from D. radiodurans with covalenly bound lactate”. X-ray diffraction at 1.88, 1 ligand (LAC), 1 pocket (best druggability 0.29). MolNFT v2 #25731 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1W3Q
- Type
- protein
- Length
- 204 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.88
- Source
- DEINOCOCCUS RADIODURANS
- Molecule
- Nima-related protein
- UniProt
- Q9RW27
- Ligands
- LAC
- Pockets
- 1 · best druggability 0.29
Structure
x-ray diffraction · resolution 1.88 · 1 distinct chain · 24% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nima-related protein | protein | 204 | 24% helix, 36% strand | Q9RW27 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 62 | 0.29 | 0.74 | 16 | LAC |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 1W3Q · Nima from D. radiodurans with covalenly bound lactate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RW27
- Elsewhere: RCSB PDB 1W3Q · PDBe 1W3Q · UniProt Q9RW27
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