MolNFT v2 · #226875 · protein
Surface glycan-binding protein A (SGBP-A, SusD-like) from a mixed-linkage beta-glucan utilization locus in Segatella copri in complex with cellopentaose
9BAL · Surface glycan-binding protein A (SGBP-A): “Surface glycan-binding protein A (SGBP-A, SusD-like) from a mixed-linkage beta-glucan utilization locus in…”. X-ray diffraction at 1.5, 2 ligands (BGC, MG), 4 pockets (best druggability…
- PDB
- 9BAL
- Type
- protein
- Length
- 552 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.5
- Source
- Segatella copri DSM 18205
- Molecule
- Surface glycan-binding protein A (SGBP-A)
- UniProt
- D1PD12
- Ligands
- BGC, MG
- Pockets
- 4 · best druggability 0.58
Structure
x-ray diffraction · resolution 1.5 · 1 distinct chain · 51% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Surface glycan-binding protein A (SGBP-A) | protein | 552 | 51% helix, 5% strand | D1PD12 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 114 | 0.58 | 0.85 | 26 | empty |
| 2 | 123 | 0.44 | 0.77 | 19 | empty |
| 3 | 125 | 0.42 | 0.76 | 20 | empty |
| 4 | 72 | 0.41 | 0.80 | 15 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D1PD12
- Elsewhere: RCSB PDB 9BAL · PDBe 9BAL · UniProt D1PD12
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