MolNFT v2 · #226118 · protein

Crystal structure of 5-phosphomethyl-2'-deoxyuridine (5-PmdU) glycinyltransferase gp46/PUGT from Pseudomonads phage PaMx11

8Z2M: “Crystal structure of 5-phosphomethyl-2'-deoxyuridine (5-PmdU) glycinyltransferase gp46/PUGT from Pseudomonads…”. X-ray diffraction at 2, 1 ligand (SO4), 1 pocket (best druggability 0.69). MolNFT v2 #226118 on GenesisL1: 3D…

PDB: 8Z2M
Type: protein
Length: 287 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2
Source: Pseudomonas phage PaMx11
Molecule: Glycinyltransferase
UniProt: A0A0S0MVI5
Ligands: SO4
Pockets: 1 · best druggability 0.69

Structure

x-ray diffraction · resolution 2 · 1 distinct chain · 61% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glycinyltransferase	protein	287	61% helix, 3% strand	A0A0S0MVI5

Ligands and binding sites

SO4 · Sulfate ion · ion · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	473	0.69	0.80	43	SO4

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0S0MVI5
Elsewhere: RCSB PDB 8Z2M · PDBe 8Z2M · UniProt A0A0S0MVI5

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