MolNFT v2 · #220899 · protein
Crystal Structure of Pyridoxal Reductase (PDXI)
8TE8 · Pyridoxine 4-dehydrogenase: “Crystal Structure of Pyridoxal Reductase (PDXI)”. X-ray diffraction at 2.2, 6 pockets (best druggability 0.59). MolNFT v2 #220899 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8TE8
- Type
- protein
- Length
- 565 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.2
- Source
- Escherichia coli
- Molecule
- Pyridoxine 4-dehydrogenase
- EC
- 1.1.1.65
- UniProt
- P25906
- Pockets
- 6 · best druggability 0.59
Structure
x-ray diffraction · resolution 2.2 · 2 distinct chains · 42% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pyridoxine 4-dehydrogenase (EC 1.1.1.65) | protein | 282 | 41% helix, 18% strand | P25906 |
| B | Pyridoxine 4-dehydrogenase (EC 1.1.1.65) | protein | 283 | 43% helix, 20% strand | P25906 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 217 | 0.59 | 0.80 | 38 | empty |
| 2 | 314 | 0.58 | 0.77 | 26 | empty |
| 3 | 220 | 0.56 | 0.79 | 37 | empty |
| 4 | 190 | 0.49 | 0.76 | 24 | empty |
| 5 | 66 | 0.47 | 0.84 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 377 Ų buried · 2 hydrogen bonds · protein-protein
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P25906
- Elsewhere: RCSB PDB 8TE8 · PDBe 8TE8 · UniProt P25906
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