MolNFT v2 · #219508 · protein

Monoclonal antibody MenW targeting serogroup W of Neisseria meningitidis

8S6E · MenW.01 Heavy chain: “Monoclonal antibody MenW targeting serogroup W of Neisseria meningitidis”. X-ray diffraction at 1.95, 1 ligand (NA), 5 pockets (best druggability 0.66). MolNFT v2 #219508 on GenesisL1: 3D structure, binding…

PDB: 8S6E
Type: protein
Length: 438 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.95
Source: Mus musculus
Molecule: MenW.01 Heavy chain; MenW.01 Light chain
Ligands: NA
Pockets: 5 · best druggability 0.66

Structure

x-ray diffraction · resolution 1.95 · 2 distinct chains · 8% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	MenW.01 Heavy chain	protein	224	9% helix, 50% strand	—
B	MenW.01 Light chain	protein	214	6% helix, 51% strand	—

Ligands and binding sites

NA · Sodium ion · metal · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	58	0.66	0.95	19	empty
2	384	0.55	0.74	58	empty
3	151	0.46	0.77	25	empty
4	86	0.37	0.76	16	empty
5	60	0.26	0.73	12	empty

Interfaces

1 interface between chains.

A–B · 1818 Å² buried · 13 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 5 disulfide (disulfide).

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 8S6E · PDBe 8S6E

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