MolNFT v2 · #217084 · protein
Polyoxidovanadate interaction with proteins: crystal structure of lysozyme bound to octadecavanadate ion (structure B)
8PTE · Lysozyme C: “Polyoxidovanadate interaction with proteins: crystal structure of lysozyme bound to octadecavanadate ion…”. X-ray diffraction at 1.797, 4 ligands (JQJ, H1W, NA), 1 pocket (best druggability 0.34). MolNFT v2 #217084 on…
- PDB
- 8PTE
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.797
- Source
- Gallus gallus
- Molecule
- Lysozyme C
- EC
- 3.2.1.17
- UniProt
- P00698
- Ligands
- JQJ, H1W, NA, NO3
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · resolution 1.797 · 1 distinct chain · 41% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| AAA | Lysozyme C (EC 3.2.1.17) | protein | 129 | 41% helix, 11% strand | P00698 |
Ligands and binding sites
- JQJ · Polyoxidovanadate complex · ligand · chains AAA
- H1W · pentakis(oxidanyl)vanadium · ligand · chains AAA
- NA · Sodium ion · metal · chains AAA
- NO3 · Nitrate ion · ion · 3 copies · chains AAA
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.34 | 0.77 | 15 | H1W |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00698
- Elsewhere: RCSB PDB 8PTE · PDBe 8PTE · UniProt P00698
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