MolNFT v2 · #216570 · protein + RNA
11-mer ring of human metapneumovirus (HMPV) N-RNA
8PDM · Nucleoprotein: “11-mer ring of human metapneumovirus (HMPV) N-RNA”. Electron microscopy at 3.3, 5 pockets (best druggability 0.55). MolNFT v2 #216570 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8PDM
- Type
- protein + RNA
- Length
- 358 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.3
- Source
- Escherichia coli; Human metapneumovirus (strain CAN97-83)
- Molecule
- Nucleoprotein; RNA
- UniProt
- Q6WBA1
- Pockets
- 5 · best druggability 0.55
Structure
electron microscopy · resolution 3.3 · 2 distinct chains · 60% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoprotein | protein | 351 | 60% helix, 3% strand | Q6WBA1 |
| B | RNA | rna | 7 | — | — |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.55 | 0.90 | 13 | empty |
| 2 | 93 | 0.50 | 0.83 | 21 | empty |
| 3 | 188 | 0.44 | 0.74 | 23 | empty |
| 4 | 50 | 0.40 | 0.82 | 17 | empty |
| 5 | 61 | 0.30 | 0.75 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 856 Ų buried · 27 hydrogen bonds · protein-nucleic
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6WBA1
- Elsewhere: RCSB PDB 8PDM · PDBe 8PDM · UniProt Q6WBA1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.