MolNFT v2 · #214318 · protein

Crystal structure of SP1746 from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)

8JK5 · bis(5'-nucleosyl)-tetraphosphatase (symmetrical): “Crystal structure of SP1746 from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)”. X-ray diffraction at 1.7, 2 ligands (FE, SO4), 1 pocket (best druggability…

PDB: 8JK5
Type: protein
Length: 194 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.7
Source: Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Molecule: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
EC: 3.6.1.41
UniProt: A0A0H2URF8
Ligands: FE, SO4
Pockets: 1 · best druggability 0.55

Structure

x-ray diffraction · resolution 1.7 · 1 distinct chain · 72% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) (EC 3.6.1.41)	protein	194	72% helix, 0% strand	A0A0H2URF8

Ligands and binding sites

FE · Fe (III) ion · metal · 2 copies · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	240	0.55	0.78	31	GOL

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0H2URF8
Elsewhere: RCSB PDB 8JK5 · PDBe 8JK5 · UniProt A0A0H2URF8

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