MolNFT v2 · #214218 · protein
Crystal structure of Acinetobacter baumannii exopolyphosphatase
8JGX: “Crystal structure of Acinetobacter baumannii exopolyphosphatase”. X-ray diffraction at 2.6, 16 pockets (best druggability 0.76). MolNFT v2 #214218 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8JGX
- Type
- protein
- Length
- 990 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.6
- Source
- Acinetobacter baumannii 15827
- Molecule
- Exopolyphosphatase
- EC
- 3.6.1.11
- UniProt
- A0A0E1PV46
- Pockets
- 16 · best druggability 0.76
Structure
x-ray diffraction · resolution 2.6 · 2 distinct chains · 51% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Exopolyphosphatase (EC 3.6.1.11) | protein | 491 | 52% helix, 17% strand | A0A0E1PV46 |
| B | Exopolyphosphatase (EC 3.6.1.11) | protein | 499 | 50% helix, 19% strand | A0A0E1PV46 |
Pockets
16 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 870 | 0.76 | 0.80 | 75 | empty |
| 2 | 1098 | 0.75 | 0.78 | 73 | empty |
| 3 | 598 | 0.75 | 0.82 | 61 | empty |
| 4 | 800 | 0.73 | 0.78 | 84 | empty |
| 5 | 361 | 0.64 | 0.79 | 40 | empty |
Interfaces
1 interface between chains.
- A–B · 1393 Ų buried · 17 hydrogen bonds · protein-protein
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0E1PV46
- Elsewhere: RCSB PDB 8JGX · PDBe 8JGX · UniProt A0A0E1PV46
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.