MolNFT v2 · #213752 · protein
Crystal structure of a bright green fluorescent protein (StayGold) with single mutation (N137A) in jellyfish Cytaeis uchidae from Biortus
8J2H · StayGold(N137A): “Crystal structure of a bright green fluorescent protein (StayGold) with single mutation (N137A) in jellyfish…”. X-ray diffraction at 1.7, 1 ligand (NA), 5 pockets (best druggability 0.74). MolNFT v2 #213752 on…
- PDB
- 8J2H
- Type
- protein
- Length
- 428 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.7
- Source
- Cytaeis uchidae
- Molecule
- StayGold(N137A)
- Ligands
- NA
- Pockets
- 5 · best druggability 0.74
Structure
x-ray diffraction · resolution 1.7 · 1 distinct chain · 7% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | StayGold(N137A) | protein | 214 | 7% helix, 54% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.74 | 0.99 | 23 | empty |
| 2 | 69 | 0.74 | 0.98 | 22 | empty |
| 3 | 178 | 0.52 | 0.78 | 25 | empty |
| 4 | 81 | 0.32 | 0.73 | 15 | empty |
| 5 | 85 | 0.32 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 774 Ų buried · 13 hydrogen bonds · protein-protein
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 8J2H · PDBe 8J2H
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