MolNFT v2 · #213557 · protein
Crystal structure of Q9PR55 at pH 6.0
8IWC · Uncharacterized protein UU089.1: “Crystal structure of Q9PR55 at pH 6.0”. X-ray diffraction at 2.43, 6 pockets (best druggability 0.72). MolNFT v2 #213557 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8IWC
- Type
- protein
- Length
- 629 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.43
- Source
- Ureaplasma parvum serovar 3 str. ATCC 700970
- Molecule
- Uncharacterized protein UU089.1
- UniProt
- Q9PR55
- Pockets
- 6 · best druggability 0.72
Structure
x-ray diffraction · resolution 2.43 · 2 distinct chains · 8% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, F, G | Uncharacterized protein UU089.1 | protein | 79 | 6% helix, 44% strand | Q9PR55 |
| D, E, H | Uncharacterized protein UU089.1 | protein | 78 | 9% helix, 42% strand | Q9PR55 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1118 | 0.72 | 0.76 | 77 | empty |
| 2 | 160 | 0.46 | 0.76 | 21 | empty |
| 3 | 54 | 0.40 | 0.81 | 11 | empty |
| 4 | 86 | 0.36 | 0.76 | 16 | empty |
| 5 | 56 | 0.34 | 0.77 | 14 | empty |
Interfaces
11 interfaces between chains.
- A–B · 580 Ų buried · 6 hydrogen bonds · protein-protein
- D–F · 524 Ų buried · 6 hydrogen bonds · protein-protein
- G–H · 509 Ų buried · 5 hydrogen bonds · protein-protein
- A–C · 494 Ų buried · 6 hydrogen bonds · protein-protein
- C–E · 484 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- Q9PR55 · AlphaFold monomer V2.0 prediction for uncharacterized protein UU089.1 (Q9PR55) · a predicted model of the same protein · chain D against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9PR55
- Elsewhere: RCSB PDB 8IWC · PDBe 8IWC · UniProt Q9PR55
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