MolNFT v2 · #209445 · protein
Asymmetric structure of cleaved HIV-1 AD8 envelope glycoprotein trimer in styrene-maleic acid lipid nanoparticles
8FAD: “Asymmetric structure of cleaved HIV-1 AD8 envelope glycoprotein trimer in styrene-maleic acid lipid…”. Electron microscopy at 4.0, 4 ligands (83G, NAG, BMA). MolNFT v2 #209445 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 8FAD
- Type
- protein
- Length
- 1,797 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 4.0
- Source
- Human immunodeficiency virus 1
- UniProt
- P19550, B0FDK7
- Ligands
- 83G, NAG, BMA, MAN
Structure
electron microscopy · resolution 4.0 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, D | — | protein | 138 | — | P19550 |
| C, E, A | — | protein | 466 | — | B0FDK7 |
| F | — | protein | 123 | — | P19550 |
Ligands and binding sites
- 83G · 1-[(2R)-4-(benzenecarbonyl)-2-methylpiperazin-1-yl]-2-(4-methoxy-1H-pyrrolo[2,3-b]pyridin-3-yl)ethane-1,2-dione · ligand · 3 copies · chains C, E, A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 118 copies · chains B, C, D, E, F, A
- BMA · beta-D-mannopyranose · sugar · 13 copies · chains E
- MAN · alpha-D-mannopyranose · sugar · 11 copies · chains C, E, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P19550
- Every structure of UniProt B0FDK7
- Elsewhere: RCSB PDB 8FAD · PDBe 8FAD · UniProt P19550 · UniProt B0FDK7
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