MolNFT v2 · #205949 · protein + RNA
Rnase R bound to a 30S degradation intermediate (State I - head-turning)
8CEE: “Rnase R bound to a 30S degradation intermediate (State I - head-turning)”. Electron microscopy at 3.7. MolNFT v2 #205949 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8CEE
- Type
- protein + RNA
- Length
- 4,268 residues
- Chains
- 22
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.7
- Source
- Bacillus subtilis subsp. subtilis str. 168
- UniProt
- P21464, P21466, P21467, P12879, P21472, P21473, P21474, P12874, P21477, P21468, P21475, P04969, P21465, P21469, P21470, P21471, P20282, P12878, P21476
Structure
electron microscopy · resolution 3.7 · 22 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | rna | 1333 | — | — |
| B | — | rna | 7 | — | — |
| C | — | protein | 708 | — | — |
| D | — | protein | 218 | — | P21464 |
| F | — | protein | 185 | — | P21466 |
| G | — | protein | 158 | — | P21467 |
| I | — | protein | 131 | — | P12879 |
| L | — | protein | 136 | — | P21472 |
| O | — | protein | 85 | — | P21473 |
| P | — | protein | 88 | — | P21474 |
| Q | — | protein | 84 | — | P12874 |
| S | — | protein | 83 | — | P21477 |
| T | — | protein | 95 | — | P21468 |
| U | — | protein | 64 | — | P21475 |
| V | — | protein | 101 | — | P04969 |
| E | — | protein | 205 | — | P21465 |
| H | — | protein | 149 | — | P21469 |
| J | — | protein | 108 | — | P21470 |
| K | — | protein | 95 | — | P21471 |
| M | — | protein | 108 | — | P20282 |
| N | — | protein | 49 | — | P12878 |
| R | — | protein | 78 | — | P21476 |
Compared structures
- P21464 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S2 (P21464) · a predicted model of the same protein · chain D against A, TM-score 0.99
- P04969 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S11 (P04969) · a predicted model of the same protein · chain V against A, TM-score 0.99
- P21472 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S12 (P21472) · a predicted model of the same protein · chain L against A, TM-score 0.98
- P21473 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S15 (P21473) · a predicted model of the same protein · chain O against A, TM-score 0.98
- P21475 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S18 (P21475) · a predicted model of the same protein · chain U against A, TM-score 0.98
- P21469 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S7 (P21469) · a predicted model of the same protein · chain H against A, TM-score 0.97
- P21477 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S20 (P21477) · a predicted model of the same protein · chain S against A, TM-score 0.97
- P21476 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S19 (P21476) · a predicted model of the same protein · chain R against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P21464
- Every structure of UniProt P21466
- Every structure of UniProt P21467
- Every structure of UniProt P12879
- Every structure of UniProt P21472
- Every structure of UniProt P21473
- Every structure of UniProt P21474
- Every structure of UniProt P12874
- Every structure of UniProt P21477
- Every structure of UniProt P21468
- Every structure of UniProt P21475
- Every structure of UniProt P04969
- Every structure of UniProt P21465
- Every structure of UniProt P21469
- Every structure of UniProt P21470
- Every structure of UniProt P21471
- Every structure of UniProt P20282
- Every structure of UniProt P12878
- Every structure of UniProt P21476
- Elsewhere: RCSB PDB 8CEE · PDBe 8CEE · UniProt P21464 · UniProt P21466 · UniProt P21467 · UniProt P12879 · UniProt P21472 · UniProt P21473 · UniProt P21474 · UniProt P12874 · UniProt P21477 · UniProt P21468 · UniProt P21475 · UniProt P04969 · UniProt P21465 · UniProt P21469 · UniProt P21470 · UniProt P21471 · UniProt P20282 · UniProt P12878 · UniProt P21476
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.