MolNFT v2 · #205590 · protein
Crystal structure of a computationally designed heme binding protein, dnHEM1
8C3W: “Crystal structure of a computationally designed heme binding protein, dnHEM1”. X-ray diffraction at 1.6, 2 ligands (HEM, PO4). MolNFT v2 #205590 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8C3W
- Type
- protein
- Length
- 211 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.6
- Source
- synthetic construct
- Ligands
- HEM, PO4
Structure
x-ray diffraction · resolution 1.6 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 211 | — | — |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- PO4 · Phosphate ion · ion · chains A
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 2 copies · chains A
- IMD · Imidazole · additive · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 8C3W · PDBe 8C3W
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