MolNFT v2 · #205427 · protein + RNA
Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex
8BYV: “Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex”. Electron microscopy at 2.89. MolNFT v2 #205427 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8BYV
- Type
- protein + RNA
- Length
- 3,924 residues
- Chains
- 21
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.89
- Source
- Staphylococcus aureus subsp. aureus NCTC 8325
- UniProt
- Q2FZ25, Q2FW12, Q2FXK6, Q2FW23, Q2G113, P48940, Q2FW20, Q2FW39, Q931G5, Q2FW31, P0A0H0, Q2FW30, Q2FW19, Q2G2Q1, Q2FZ45, Q2FW15, Q2G111, Q2FW10, Q2FXY6, Q2G2Q4
Structure
electron microscopy · resolution 2.89 · 21 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| a | — | rna | 1533 | — | — |
| b | — | protein | 222 | — | Q2FZ25 |
| c | — | protein | 204 | — | Q2FW12 |
| d | — | protein | 197 | — | Q2FXK6 |
| e | — | protein | 154 | — | Q2FW23 |
| f | — | protein | 94 | — | Q2G113 |
| g | — | protein | 140 | — | P48940 |
| h | — | protein | 131 | — | Q2FW20 |
| i | — | protein | 128 | — | Q2FW39 |
| j | — | protein | 99 | — | Q931G5 |
| k | — | protein | 118 | — | Q2FW31 |
| l | — | protein | 135 | — | P0A0H0 |
| m | — | protein | 110 | — | Q2FW30 |
| n | — | protein | 60 | — | Q2FW19 |
| o | — | protein | 88 | — | Q2G2Q1 |
| p | — | protein | 90 | — | Q2FZ45 |
| q | — | protein | 85 | — | Q2FW15 |
| r | — | protein | 58 | — | Q2G111 |
| s | — | protein | 82 | — | Q2FW10 |
| t | — | protein | 80 | — | Q2FXY6 |
| A | — | protein | 116 | — | Q2G2Q4 |
Compared structures
- Q2FW20 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S8 (Q2FW20) · a predicted model of the same protein · chain h against A, TM-score 0.98
- Q2FZ45 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S16 (Q2FZ45) · a predicted model of the same protein · chain p against A, TM-score 0.95
- Q931G5 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S10 (Q931G5) · a predicted model of the same protein · chain j against A, TM-score 0.92
- Q2FW39 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S9 (Q2FW39) · a predicted model of the same protein · chain i against A, TM-score 0.86
- Q2FW10 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S19 (Q2FW10) · a predicted model of the same protein · chain s against A, TM-score 0.78
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2FZ25
- Every structure of UniProt Q2FW12
- Every structure of UniProt Q2FXK6
- Every structure of UniProt Q2FW23
- Every structure of UniProt Q2G113
- Every structure of UniProt P48940
- Every structure of UniProt Q2FW20
- Every structure of UniProt Q2FW39
- Every structure of UniProt Q931G5
- Every structure of UniProt Q2FW31
- Every structure of UniProt P0A0H0
- Every structure of UniProt Q2FW30
- Every structure of UniProt Q2FW19
- Every structure of UniProt Q2G2Q1
- Every structure of UniProt Q2FZ45
- Every structure of UniProt Q2FW15
- Every structure of UniProt Q2G111
- Every structure of UniProt Q2FW10
- Every structure of UniProt Q2FXY6
- Every structure of UniProt Q2G2Q4
- Elsewhere: RCSB PDB 8BYV · PDBe 8BYV · UniProt Q2FZ25 · UniProt Q2FW12 · UniProt Q2FXK6 · UniProt Q2FW23 · UniProt Q2G113 · UniProt P48940 · UniProt Q2FW20 · UniProt Q2FW39 · UniProt Q931G5 · UniProt Q2FW31 · UniProt P0A0H0 · UniProt Q2FW30 · UniProt Q2FW19 · UniProt Q2G2Q1 · UniProt Q2FZ45 · UniProt Q2FW15 · UniProt Q2G111 · UniProt Q2FW10 · UniProt Q2FXY6 · UniProt Q2G2Q4
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