MolNFT v2 · #204726 · protein
Ribulose-1,5-bisphosphate carboxylase/oxygenase from Griffithsia monilis
8BDB: “Ribulose-1,5-bisphosphate carboxylase/oxygenase from Griffithsia monilis”. X-ray diffraction at 1.7, 3 ligands (BCT, CAP, MG). MolNFT v2 #204726 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8BDB
- Type
- protein
- Length
- 4,926 residues
- Chains
- 16
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.7
- Source
- Griffithsia monilis
- UniProt
- A7UM67, A7UM68
- Ligands
- BCT, CAP, MG
Structure
x-ray diffraction · resolution 1.7 · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 480 | — | A7UM67 |
| B, D, F, H, J, L, N, P | — | protein | 138 | — | A7UM68 |
| C, G, K, O | — | protein | 479 | — | A7UM67 |
| E | — | protein | 468 | — | A7UM67 |
| I, M | — | protein | 479 | — | A7UM67 |
Ligands and binding sites
- BCT · Bicarbonate ion · ligand · 31 copies · chains A, B, C, D, E, F, G, H, I, K, L, M, N, O
- CAP · 2-carboxyarabinitol-1,5-diphosphate · sugar · 8 copies · chains A, C, E, G, I, K, M, O
- MG · Magnesium ion · metal · 8 copies · chains A, C, E, G, I, K, M, O
- EDO · 1,2-ethanediol · additive · 133 copies · chains A, O, P, C, B, D, M, N, E, I, J, F, K, L, G, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7UM67
- Every structure of UniProt A7UM68
- Elsewhere: RCSB PDB 8BDB · PDBe 8BDB · UniProt A7UM67 · UniProt A7UM68
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