MolNFT v2 · #204454 · protein
Structure of prolyl endoprotease from Aspergillus niger CBS 109712
8B57: “Structure of prolyl endoprotease from Aspergillus niger CBS 109712”. X-ray diffraction at 2.42, 3 ligands (NAG, MAN, BMA). MolNFT v2 #204454 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8B57
- Type
- protein
- Length
- 485 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.42
- Source
- Aspergillus niger
- Ligands
- NAG, MAN, BMA
Structure
x-ray diffraction · resolution 2.42 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 485 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 11 copies · chains A
- MAN · alpha-D-mannopyranose · sugar · 7 copies · chains A
- BMA · beta-D-mannopyranose · sugar · 2 copies · chains A
- GOL · Glycerol · additive · 2 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
- PG4 · Tetraethylene glycol · additive · chains A
- 1PE · Pentaethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 8B57 · PDBe 8B57
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