MolNFT v2 · #204137 · protein
Racemic protein crystal structure of aureocin A53 from Staphylococcus aureus in the presence of glycerol 3-phosphate
8AVT: “Racemic protein crystal structure of aureocin A53 from Staphylococcus aureus in the presence of glycerol…”. X-ray diffraction at 1.2, 1 ligand (G3P). MolNFT v2 #204137 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8AVT
- Type
- protein
- Length
- 204 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.2
- Ligands
- G3P
Structure
x-ray diffraction · resolution 1.2 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, D, B, A | — | protein | 51 | — | — |
Ligands and binding sites
- G3P · Sn-glycerol-3-phosphate · ligand · 2 copies · chains D, A
- EDO · 1,2-ethanediol · additive · 5 copies · chains C, D, B
- PEG · Di(hydroxyethyl)ether · additive · chains C
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- Q8GPI4 · AlphaFold monomer V2.0 prediction for bacteriocin aureocin A53 (Q8GPI4) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 8AVT · PDBe 8AVT
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