MolNFT v2 · #202611 · protein
Nariva virus receptor binding protein
7ZM6 · Attachment protein: “Nariva virus receptor binding protein”. X-ray diffraction at 2.07, 13 pockets (best druggability 0.68). MolNFT v2 #202611 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7ZM6
- Type
- protein
- Length
- 862 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.07
- Source
- Nariva narmovirus
- Molecule
- Attachment protein
- UniProt
- B8XH64
- Pockets
- 13 · best druggability 0.68
Structure
x-ray diffraction · resolution 2.07 · 2 distinct chains · 5% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Attachment protein | protein | 429 | 4% helix, 48% strand | B8XH64 |
| B | Attachment protein | protein | 433 | 5% helix, 47% strand | B8XH64 |
Pockets
13 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 116 | 0.68 | 0.91 | 31 | empty |
| 2 | 486 | 0.67 | 0.79 | 54 | empty |
| 3 | 96 | 0.66 | 0.91 | 26 | empty |
| 4 | 495 | 0.66 | 0.78 | 71 | empty |
| 5 | 106 | 0.62 | 0.88 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 2219 Ų buried · 22 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B8XH64
- Elsewhere: RCSB PDB 7ZM6 · PDBe 7ZM6 · UniProt B8XH64
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