MolNFT v2 · #202141 · protein
CRYO-EM STRUCTURE OF SARS-COV-2 SPIKE : H11-H4 Q98R H100E nanobody complex in 1Up2Down conformation
7Z86: “CRYO-EM STRUCTURE OF SARS-COV-2 SPIKE : H11-H4 Q98R H100E nanobody complex in 1Up2Down conformation”. Electron microscopy at 3.4, 1 ligand (NAG). MolNFT v2 #202141 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7Z86
- Type
- protein
- Length
- 3,348 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.4
- Source
- Escherichia virus T4; Lama glama; Severe acute respiratory syndrome coronavirus…
- UniProt
- P0DTC2, P10104
- Ligands
- NAG
Structure
electron microscopy · resolution 3.4 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 987 | — | P0DTC2, P10104 |
| B | — | protein | 992 | — | P0DTC2, P10104 |
| C | — | protein | 991 | — | P0DTC2, P10104 |
| X, Y, Z | — | protein | 126 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 66 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7Z86 · Cryo-EM structure of SARS-cov-2 spike : H11-H4 Q98R H100E nanobody complex in 1UP2DOWN… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Every structure of UniProt P10104
- Elsewhere: RCSB PDB 7Z86 · PDBe 7Z86 · UniProt P0DTC2 · UniProt P10104
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