MolNFT v2 · #201178 · protein + DNA
The cryo-EM structure of C. crescentus GcrA-TACdown
7YE2: “The cryo-EM structure of C. crescentus GcrA-TACdown”. Electron microscopy at 3.8, 2 ligands (ZN, MG). MolNFT v2 #201178 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7YE2
- Type
- protein + DNA
- Length
- 3,724 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.8
- Source
- Caulobacter vibrioides NA1000; SYNTHETIC CONSTRUCT
- UniProt
- B8H4F8, B8GZW7, A0A0H3C4W8, B8H618, A0A0H3CAV3, A0A0H3C9J4
- Ligands
- ZN, MG
Structure
electron microscopy · resolution 3.8 · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 306 | — | B8H4F8 |
| B | — | protein | 220 | — | B8H4F8 |
| C | — | protein | 1303 | — | B8GZW7 |
| D | — | protein | 1140 | — | A0A0H3C4W8 |
| E | — | protein | 69 | — | B8H618 |
| F | — | protein | 497 | — | A0A0H3CAV3 |
| H | — | dna | 68 | — | — |
| I | — | dna | 68 | — | — |
| G | — | protein | 53 | — | A0A0H3C9J4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- B8H618 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit omega (B8H618) · a predicted model of the same protein · chain E against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B8H4F8
- Every structure of UniProt B8GZW7
- Every structure of UniProt A0A0H3C4W8
- Every structure of UniProt B8H618
- Every structure of UniProt A0A0H3CAV3
- Every structure of UniProt A0A0H3C9J4
- Elsewhere: RCSB PDB 7YE2 · PDBe 7YE2 · UniProt B8H4F8 · UniProt B8GZW7 · UniProt A0A0H3C4W8 · UniProt B8H618 · UniProt A0A0H3CAV3 · UniProt A0A0H3C9J4
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