MolNFT v2 · #198999 · protein
The state 3 complex structure of Omicron spike with Bn03 (2-up RBD, 5 nanobodies)
7WHK: “The state 3 complex structure of Omicron spike with Bn03 (2-up RBD, 5 nanobodies)”. Electron microscopy at 3.01, 1 ligand (NAG). MolNFT v2 #198999 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7WHK
- Type
- protein
- Length
- 3,697 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.01
- Source
- Homo sapiens; Severe acute respiratory syndrome coronavirus 2
- UniProt
- P0DTC2
- Ligands
- NAG
Structure
electron microscopy · resolution 3.01 · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1040 | — | P0DTC2 |
| B | — | protein | 1027 | — | P0DTC2 |
| C | — | protein | 1043 | — | P0DTC2 |
| D, H | — | protein | 119 | — | — |
| E | — | protein | 117 | — | — |
| F, G | — | protein | 116 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 28 copies · chains A, E, C, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7WHK · The state 3 complex structure of omicron spike with BN03 (2-up rbd, 5 nanobodies) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7WHK · PDBe 7WHK · UniProt P0DTC2
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