MolNFT v2 · #195602 · protein
SARS-CoV-2 Spike-derived peptide S489-497 (YFPLQSYGF) presented by HLA-A*29:02
7TLT: “SARS-CoV-2 Spike-derived peptide S489-497 (YFPLQSYGF) presented by HLA-A*29:02”. X-ray diffraction at 2.3, 3 ligands (MG, NA, SO4). MolNFT v2 #195602 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7TLT
- Type
- protein
- Length
- 767 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.3
- Source
- Homo sapiens; SYNTHETIC CONSTRUCT
- UniProt
- B0UXQ0, P61769, P0DTC2
- Ligands
- MG, NA, SO4
Structure
x-ray diffraction · resolution 2.3 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 275 | — | B0UXQ0 |
| B | — | protein | 99 | — | P61769 |
| D | — | protein | 100 | — | P61769 |
| E, F | — | protein | 9 | — | P0DTC2 |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A, E, B
- NA · Sodium ion · metal · 2 copies · chains A, B, C
- SO4 · Sulfate ion · ion · 5 copies · chains A, C, B, D, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- P61769 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P61769) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0UXQ0
- Every structure of UniProt P61769
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7TLT · PDBe 7TLT · UniProt B0UXQ0 · UniProt P61769 · UniProt P0DTC2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.