MolNFT v2 · #195416 · protein
SARS-CoV-2 Omicron 1-RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron)
7TGE: “SARS-CoV-2 Omicron 1-RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations…”. Electron microscopy at 3.68, 1 ligand (NAG). MolNFT v2 #195416 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7TGE
- Type
- protein
- Length
- 2,677 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.68
- Source
- Severe acute respiratory syndrome coronavirus 2
- Ligands
- NAG
Structure
electron microscopy · resolution 3.68 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1030 | — | — |
| B | — | protein | 842 | — | — |
| C | — | protein | 805 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 40 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7TGE · SARS-cov-2 omicron 1-rbd down spike protein trimer without the P986- P987 stabilizing… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7TGE · PDBe 7TGE
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