MolNFT v2 · #195275 · protein
Cryo-EM structure of SARS-CoV-2 Omicron spike in complex with antibodies A19-46.1 and B1-182.1
7TCC: “Cryo-EM structure of SARS-CoV-2 Omicron spike in complex with antibodies A19-46.1 and B1-182.1”. Electron microscopy at 3.86, 1 ligand (NAG). MolNFT v2 #195275 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7TCC
- Type
- protein
- Length
- 4,750 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.86
- Source
- Homo sapiens; Severe acute respiratory syndrome coronavirus 2
- UniProt
- P0DTC2
- Ligands
- NAG
Structure
electron microscopy · resolution 3.86 · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 1118 | — | P0DTC2 |
| B | — | protein | 1116 | — | P0DTC2 |
| D, H, M | — | protein | 126 | — | — |
| E, L, N | — | protein | 110 | — | — |
| J, O, F | — | protein | 122 | — | — |
| K, P, G | — | protein | 108 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 41 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7TCC · Cryo-EM structure of SARS-cov-2 omicron spike in complex with antibodies A19-46.1 and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7TCC · PDBe 7TCC · UniProt P0DTC2
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