MolNFT v2 · #193809 · protein
CryoEM structure of Methylocystis sp. str. Rockwell pMMO in a POPC nanodisc at 2.42 Angstrom resolution
7S4M: “CryoEM structure of Methylocystis sp. str. Rockwell pMMO in a POPC nanodisc at 2.42 Angstrom resolution”. Electron microscopy at 2.42, 4 ligands (HXG, D10, D12). MolNFT v2 #193809 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7S4M
- Type
- protein
- Length
- 2,676 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.42
- Source
- Methylocystis sp. ATCC 49242
- Ligands
- HXG, D10, D12, CU
Structure
electron microscopy · resolution 2.42 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E, I | — | protein | 388 | — | — |
| F, B, J | — | protein | 244 | — | — |
| G, C, K | — | protein | 241 | — | — |
| D, N, H | — | protein | 19 | — | — |
Ligands and binding sites
- HXG · 1,2-dihexanoyl-sn-glycero-3-phosphocholine · ligand · 12 copies · chains F, E, B, C, A, J, K, I, G, H, D, N
- D10 · Decane · ligand · 6 copies · chains F, B, J, K, G, C
- D12 · Dodecane · ligand · 3 copies · chains J, G, F, C, B, K
- CU · Copper (II) ion · metal · 6 copies · chains A, G, C, K, E, I
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7S4M · Cryoem structure of methylocystis sp. str. rockwell pmmo in a popc nanodisc at 2.42… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7S4M · PDBe 7S4M
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