MolNFT v2 · #193808 · protein
CryoEM structure of Methylotuvimicrobium alcaliphilum 20Z pMMO in a POPC nanodisc at 2.46 Angstrom resolution
7S4L: “CryoEM structure of Methylotuvimicrobium alcaliphilum 20Z pMMO in a POPC nanodisc at 2.46 Angstrom resolution”. Electron microscopy at 2.46, 4 ligands (HXG, D10, 6ER). MolNFT v2 #193808 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7S4L
- Type
- protein
- Length
- 2,556 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.46
- Source
- Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 /…
- UniProt
- G4SZ64, G4SZ63, G4SZ62
- Ligands
- HXG, D10, 6ER, CU
Structure
electron microscopy · resolution 2.46 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D, E | — | protein | 382 | — | G4SZ64 |
| B, F, G | — | protein | 239 | — | G4SZ63 |
| C, H, I | — | protein | 231 | — | G4SZ62 |
Ligands and binding sites
- HXG · 1,2-dihexanoyl-sn-glycero-3-phosphocholine · ligand · 15 copies · chains A, B, G, C, H, I, F, D, E
- D10 · Decane · ligand · 9 copies · chains B, C, H, I, F, G
- 6ER · (S)-2,3-bis(hexanoyloxy)propyl(2-(trimethylammonio) ethyl)phosphate · ligand · 3 copies · chains B, C, H, I, G, F
- CU · Copper (II) ion · metal · 9 copies · chains A, C, H, I, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7S4L · Cryoem structure of methylotuvimicrobium alcaliphilum 20Z pmmo in a popc nanodisc at 2.46… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G4SZ64
- Every structure of UniProt G4SZ63
- Every structure of UniProt G4SZ62
- Elsewhere: RCSB PDB 7S4L · PDBe 7S4L · UniProt G4SZ64 · UniProt G4SZ63 · UniProt G4SZ62
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