GL1X · GenesisL1 explorer

MolNFT v2 · #191241 · protein + RNA

Structure of the Candida albicans 80S ribosome in complex with anisomycin

7Q0P: “Structure of the Candida albicans 80S ribosome in complex with anisomycin”. Electron microscopy at 2.77, 3 ligands (SPD, ANM, ZN). MolNFT v2 #191241 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7Q0P
Type
protein + RNA
Length
16,335 residues
Chains
80
Method
electron microscopy
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
2.77
Source
Candida albicans SC5314
UniProt
A0A1D8PF08, Q59LS1, A0A1D8PFV1, Q5AGZ7, A0A1D8PCX8, A0A1D8PDL6, Q5ANA1, Q5AEN2, Q5AIB8, A0A1D8PHW1, O59931, A0A1D8PFL9, Q5A6R1, Q5AB87, Q59TE0, A0A1D8PK43, A0A1D8PK40, A0A1D8PLC9, A0A1D8PGY0, A0A1D8PM41, A0A1D8PPT5, Q5A6A1, A0A1D8PPS1, A0A1D8PCQ5, A0A1D8PFG4, A0A1D8PSC5, A0A1D8PF57, A0A1D8PM75, A0A1D8PHF5, A0A1D8PPN6, A0A1D8PHH4, A0A1D8PDZ1, A0A1D8PK30, A0A1D8PH21, A0A1D8PF45, A0A1D8PG16, A0A1D8PDT4, A0A1D8PL68, A0A1D8PEV4, A0A1D8PP14, A0A1D8PK71, O42817, P40910, Q5A900, A0A1D8PSV5, A0A1D8PCI6, Q5AG43, A0A1D8PL99, Q5AJ93, Q59T44, A0A1D8PGY8, A0A1D8PI15, A0A1D8PN83, Q5ADQ6, A0A1D8PPE0, A0A1D8PDT3, A0A1D8PK22, A0A1D8PCW6, A0A1D8PEY9, A0A1D8PQQ5, A0A1D8PK61, Q5A389, A0A1D8PCG7, P0CU35, A0A1D8PDU3, Q5A7K0, A0A1D8PNQ6, Q5ALV6, A0A1D8PTI7, A0A1D8PQN0, A0A1D8PTR4, A0A1D8PSK2, Q5A109, P83774
Ligands
SPD, ANM, ZN

Structure

electron microscopy · resolution 2.77 · 80 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
1—rna3209——
3—rna121——
4—rna158——
10—rna14——
j—protein249—A0A1D8PF08
k—protein386—Q59LS1
l—protein361—A0A1D8PFV1
m—protein292—Q5AGZ7
n—protein155—A0A1D8PCX8
o—protein234—A0A1D8PDL6
p—protein238—Q5ANA1
q—protein190—Q5AEN2
r—protein208—Q5AIB8
s—protein172—A0A1D8PHW1
t—protein200—O59931
u—protein130—A0A1D8PFL9
v—protein203—Q5A6R1
w—protein199—Q5AB87
x—protein172—Q59TE0
y—protein185—A0A1D8PK43
z—protein179—A0A1D8PK40
0—protein171—A0A1D8PLC9
2—protein159—A0A1D8PGY0
5—protein103—A0A1D8PM41
6—protein131—A0A1D8PPT5
7—protein63—Q5A6A1
8—protein121—A0A1D8PPS1
9—protein126—A0A1D8PCQ5
AA—protein135—A0A1D8PFG4
AB—protein148—A0A1D8PSC5
AC—protein63—A0A1D8PF57
AD—protein96—A0A1D8PM75
AE—protein109—A0A1D8PHF5
AF—protein125—A0A1D8PPN6
AG—protein106—A0A1D8PHH4
AH—protein112—A0A1D8PDZ1
AI—protein119—A0A1D8PK30
AJ—protein98—A0A1D8PH21
AK—protein86—A0A1D8PF45
AL—protein77—A0A1D8PG16
AM—protein50—A0A1D8PDT4
AN—protein52—A0A1D8PL68
AO—protein24——
AP—protein103—A0A1D8PEV4
AQ—protein91—A0A1D8PP14
i—protein113—A0A1D8PK71
A—rna1692——
B—protein208—O42817
C—protein214—P40910
D—protein216—Q5A900
E—protein223—A0A1D8PSV5
F—protein260—A0A1D8PCI6
G—protein206—Q5AG43
H—protein226—A0A1D8PL99
I—protein182—Q5AJ93
J—protein203—Q59T44
K—protein178—A0A1D8PGY8
L—protein93—A0A1D8PI15
M—protein141—A0A1D8PN83
N—protein116—Q5ADQ6
O—protein150—A0A1D8PPE0
P—protein127—A0A1D8PDT3
Q—protein118—A0A1D8PK22
R—protein140—A0A1D8PCW6
S—protein125—A0A1D8PEY9
T—protein142—A0A1D8PQQ5
U—protein141—A0A1D8PK61
V—protein100—Q5A389
W—protein87—A0A1D8PCG7
X—protein129—P0CU35
Y—protein143—A0A1D8PDU3
Z—protein132—Q5A7K0
a—protein72—A0A1D8PNQ6
b—protein100—Q5ALV6
c—protein81—A0A1D8PTI7
d—protein62—A0A1D8PQN0
e—protein55—A0A1D8PTR4
f—protein56—A0A1D8PSK2
g—protein70—Q5A109
h—protein311—P83774

Ligands and binding sites

  • SPD · Spermidine · ligand · 2 copies · chains 1, AB
  • ANM · Anisomycin · ligand · chains 1
  • ZN · Zinc ion · metal · 8 copies · chains AK, AN, AP, AQ, A, b, c, e, g

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • P83774 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein subunit… · a predicted model of the same protein · chain h against A, TM-score 0.98

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