MolNFT v2 · #190389 · protein + DNA
RuvAB branch migration motor complexed to the Holliday junction - RuvB AAA+ state s1 [t2 dataset]
7PBL: “RuvAB branch migration motor complexed to the Holliday junction - RuvB AAA+ state s1 [t2 dataset]”. Electron microscopy at 3.2, 3 ligands (AGS, ADP, MG). MolNFT v2 #190389 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7PBL
- Type
- protein + DNA
- Length
- 1,948 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.2
- Source
- Salmonella typhimurium; Streptococcus thermophilus; SYNTHETIC CONSTRUCT
- UniProt
- A0A2U2MES7, A0A0M0QTS9
- Ligands
- AGS, ADP, MG
Structure
electron microscopy · resolution 3.2 · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, E, F | — | protein | 312 | — | A0A2U2MES7 |
| C | — | protein | 309 | — | A0A2U2MES7 |
| D | — | protein | 313 | — | A0A2U2MES7 |
| G | — | protein | 48 | — | A0A0M0QTS9 |
| U | — | dna | 15 | — | — |
| V | — | dna | 15 | — | — |
Ligands and binding sites
- AGS · Phosphothiophosphoric acid-adenylate ester · ligand · 3 copies · chains A, F, B, C
- ADP · Adenosine-5'-diphosphate · ligand · 3 copies · chains D, E, F
- MG · Magnesium ion · metal · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2U2MES7
- Every structure of UniProt A0A0M0QTS9
- Elsewhere: RCSB PDB 7PBL · PDBe 7PBL · UniProt A0A2U2MES7 · UniProt A0A0M0QTS9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.