MolNFT v2 · #189229 · protein
Natural killer cell receptor NKR-P1B from Rattus norvegicus in complex with its cognate ligand Clr-11
7ODU: “Natural killer cell receptor NKR-P1B from Rattus norvegicus in complex with its cognate ligand Clr-11”. X-ray diffraction at 3, 2 ligands (NAG, ZN). MolNFT v2 #189229 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7ODU
- Type
- protein
- Length
- 372 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3
- Source
- Rattus norvegicus
- UniProt
- Q0H8B9, A4KWA1
- Ligands
- NAG, ZN
Structure
x-ray diffraction · resolution 3 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 129 | — | Q0H8B9 |
| B | — | protein | 122 | — | Q0H8B9 |
| C | — | protein | 121 | — | A4KWA1 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 7 copies · chains A, C, B
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7ODU · Natural killer cell receptor nkr-P1B from rattus norvegicus in complex with its cognate… · the same entry in another collection · chain A against A, TM-score 1.00
- Q0H8B9 · AlphaFold monomer V2.0 prediction for C-type lectin domain family 2 member D11 (Q0H8B9) · a predicted model of the same protein · chain B against A, TM-score 0.96
- A4KWA1 · AlphaFold monomer V2.0 prediction for killer cell lectin-like receptor subfamily B member… · a predicted model of the same protein · chain C against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0H8B9
- Every structure of UniProt A4KWA1
- Elsewhere: RCSB PDB 7ODU · PDBe 7ODU · UniProt Q0H8B9 · UniProt A4KWA1
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